BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027H10SP1|AL428811
(866 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1714 0.0
>3x_Contig1338
Length = 8134
Score = 1714 bits (864), Expect = 0.0
Identities = 865/866 (99%)
Strand = Plus / Minus
Query: 1 gatctctcagtttatgtcctctatcgttattctagcacgtgactttgctgaattagatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 gatctctcagtttatgtcctctatcgttattctagcacgtgactttgctgaattagatat 5482
Query: 61 ttgaacgtagcagctacatactttgcgaaacgtctgcattggactaatccattcctttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5481 ttgaacgtagcagctacatactttgcgaaacgtctgcattggactaatccattcctttat 5422
Query: 121 atgaccatatattgtcctatacttcgacgaatatgatgcaagtacagataatagctagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5421 atgaccatatattgtcctatacttcgacgaatatgatgcaagtacagataatagctagct 5362
Query: 181 atgagaagcaaaattccaaaatagttaacaaattcgcattaagctttaaattgtatgtwa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5361 atgagaagcaaaattccaaaatagttaacaaattcgcattaagctttaaattgtatgtaa 5302
Query: 241 tagagattgatacttatacagtttcaacatgcttagatgttagatgggtacaagaagatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5301 tagagattgatacttatacagtttcaacatgcttagatgttagatgggtacaagaagatt 5242
Query: 301 ctgacagaagcaccgaaagtcttagctggcaagttagatctgaatgtagctctaacgaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5241 ctgacagaagcaccgaaagtcttagctggcaagttagatctgaatgtagctctaacgaca 5182
Query: 361 ccggagttaccgtgtgttctgttgatcttaccccagataactctgatcttggaacctctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5181 ccggagttaccgtgtgttctgttgatcttaccccagataactctgatcttggaacctctg 5122
Query: 421 acttccttggagcatctgtagacataggcgactctcttacccaagtagaacttagcgtct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5121 acttccttggagcatctgtagacataggcgactctcttacccaagtagaacttagcgtct 5062
Query: 481 tctgggttggcaacaccttcaatcttgaccaaagagacgtttgggttgttaacgctcttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 tctgggttggcaacaccttcaatcttgaccaaagagacgtttgggttgttaacgctcttg 5002
Query: 541 gatctttggtatgacaaatgcttacctttgacgtacactgtaaaaattaaaccacgtagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 gatctttggtatgacaaatgcttacctttgacgtacactgtaaaaattaaaccacgtagg 4942
Query: 601 gatgaaaaaggttagtaagggtgagtttttaattggaggtccagatagtacaggtaatgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 gatgaaaaaggttagtaagggtgagtttttaattggaggtccagatagtacaggtaatgc 4882
Query: 661 tgccacgagtgaataaaataatattcatccatgaaaacagaacctcatatgattgtcata 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 tgccacgagtgaataaaataatattcatccatgaaaacagaacctcatatgattgtcata 4822
Query: 721 ataatgaagagtataccccattagaagggaatgaacatggatttgttatgtctgtcctgg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4821 ataatgaagagtataccccattagaagggaatgaacatggatttgttatgtctgtcctgg 4762
Query: 781 ctaatatcagtactaaattttcacgtactaagtacttccgtcgtattccgaaaaaggttg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4761 ctaatatcagtactaaattttcacgtactaagtacttccgtcgtattccgaaaaaggttg 4702
Query: 841 atagagttgaaatcagtcacatctaa 866
||||||||||||||||||||||||||
Sbjct: 4701 atagagttgaaatcagtcacatctaa 4676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5655
Number of Sequences: 1807
Number of extensions: 5655
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 866
length of database: 10,358,551
effective HSP length: 16
effective length of query: 850
effective length of database: 10,329,639
effective search space: 8780193150
effective search space used: 8780193150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)